Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_487958_488387_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

487958 - 488387

Intron Length:

430

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGGAAC

5'SS Class:

strong_major

3'SS Sequence:

GTTTTTTTGCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATGTTAT

U12 Branch Point Sequence:

TTATCTATAACT

Flanking Amino Acid:

QHVVEDSWRSGGFRNLHTIV

Intron Amino Acid Position:

290

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

0.9

74.8

35.2

Major BPS

72.5

0.56

1.2

63.4

Major PPT

81.9

0.72

76.9

42.1

Minor 5ss

38.6

-1.3

3.1

50.7

46.2

Minor BPS

74.1

0.83

1.5

90.01

33.5

Associated Gene:

Gene:

FBXO38

Ensembl Gene ID:

ENSAPLG00000009306

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009723

473095 - 492271

19177