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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_488526_488808_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
488526 - 488808
Intron Length:
283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCTACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAA
U12 Branch Point Sequence:
ATTTTGTTAACT
Flanking Amino Acid:
LRTFVMRNCAGPTNSLKYVP
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
72.1
0.55
1.2
63.7
43.9
Major PPT
73.9
0.54
0.9
69.5
35.8
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
70.5
0.72
2
89.83
34.4

Associated Gene:

Gene:
FBXO38
Ensembl Gene ID:
ENSAPLG00000009306
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009723
473095 - 492271
19177