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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_491267_492129_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
491267 - 492129
Intron Length:
863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTCCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
ATCTGATAAACC
Flanking Amino Acid:
LSHEVLCHIFRYLPLQDIMC
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
66.1
0.36
1
66.7
27.1
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
46.3
-0.3
2.3
61.52
43.8

Associated Gene:

Gene:
FBXO38
Ensembl Gene ID:
ENSAPLG00000009306
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009723
473095 - 492271
19177