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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_4973554_4978828_R

Intron Information:

Intron Rank:
136376
Intron Class:
major
Intron Phase:
Intron Coordinates:
4973554 - 4978828
Intron Length:
5275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACTCCAA
5'SS Class:
major
3'SS Sequence:
AATTTCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
AGTATCTAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.4
0.43
1.1
58.1
42.6
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
84.8
0.78
0.8
81.8
34.9
Minor 5ss
36.2
-1.6
3.2
47.7
47.8
Minor BPS
55.8
0.26
1.7
71.37
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020788
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042112
4973372 - 4978911
5540