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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_4975132_4978828_R

Intron Information:

Intron Rank:
136375
Intron Class:
major
Intron Phase:
Intron Coordinates:
4975132 - 4978828
Intron Length:
3697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACTCCAA
5'SS Class:
major
3'SS Sequence:
AAATGTCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
CGTCTTTGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.4
0.43
1.1
58.1
42.6
Major BPS
74.8
0.62
1
67
39.8
Major PPT
69.9
0.45
1
59.1
46.2
Minor 5ss
36.2
-1.6
3.2
47.7
47.8
Minor BPS
48.9
-0
1.5
63.94
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020788
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017603
4973372 - 4978911
5540