Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_4980009_4980123_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

4980009 - 4980123

Intron Length:

115

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAATCTGC

5'SS Class:

major

3'SS Sequence:

GCTTTCTTTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAAACAA

U12 Branch Point Sequence:

CTCTTCTGGACT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.1

0.47

1.1

58.7

41.4

Major BPS

0.1

1.1

61.6

34.2

Major PPT

81.8

0.72

0.8

31.6

Minor 5ss

44.4

-0.6

2.8

56.6

Minor BPS

61.2

0.43

1.5

75.04

42.1

Associated Gene:

Gene:

SPDL1

Ensembl Gene ID:

ENSAPLG00000013147

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047335

4979659 - 5001625

21967