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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_4981342_4983332_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4981342 - 4983332
Intron Length:
1991

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATGTTT
5'SS Class:
major
3'SS Sequence:
TTATTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
TATGTCTAGATT
Flanking Amino Acid:
TRRELTEKTEKFEQDKYSLQ
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
77.5
33.1
Major BPS
78.3
0.7
1
80
32.1
Major PPT
89.5
0.89
0.7
85.1
29.3
Minor 5ss
37.3
-1.4
3.5
55.5
48.6
Minor BPS
51
0.11
1.8
70.64
41.1

Associated Gene:

Gene:
SPDL1
Ensembl Gene ID:
ENSAPLG00000013147
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013721
4979076 - 4993489
14414
ENSAPLT00000047335
4979659 - 5001625
21967
ENSAPLT00000020055
4980124 - 5002204
22081
ENSAPLT00000019605
4980124 - 5002204
22081