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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_4984694_4985347_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
4984694 - 4985347
Intron Length:
654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTCTCT
5'SS Class:
weak_major
3'SS Sequence:
TGCTTAAATCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTTTGCTTAAAT
Flanking Amino Acid:
EVVSYCNALEKAREANQELQ
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
66.9
39.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
64.9
0.34
1
56.6
42.8
Minor 5ss
59.3
0.31
2.3
74.9
41.1
Minor BPS
67.8
0.64
1.9
85.06
41.4

Associated Gene:

Gene:
SPDL1
Ensembl Gene ID:
ENSAPLG00000013147
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020055
4980124 - 5002204
22081
ENSAPLT00000019605
4980124 - 5002204
22081
ENSAPLT00000013721
4979076 - 4993489
14414
ENSAPLT00000047335
4979659 - 5001625
21967