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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_4985447_4986296_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4985447 - 4986296
Intron Length:
850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAACTA
5'SS Class:
major
3'SS Sequence:
AAATGTTCTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TAATTGTTAAAA
Flanking Amino Acid:
TSKGNSLFAEVEDRRAEMER
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
65.2
40.7
Major BPS
100
1.24
0.5
100
0
Major PPT
66.1
0.36
1
58.8
42
Minor 5ss
33.8
-1.8
3.5
47.8
47.6
Minor BPS
52.1
0.06
2.1
66.45
39.5

Associated Gene:

Gene:
SPDL1
Ensembl Gene ID:
ENSAPLG00000013147
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020055
4980124 - 5002204
22081
ENSAPLT00000019605
4980124 - 5002204
22081
ENSAPLT00000013721
4979076 - 4993489
14414
ENSAPLT00000047335
4979659 - 5001625
21967