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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_4986408_4989127_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4986408 - 4989127
Intron Length:
2720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGACCG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTCCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAA
U12 Branch Point Sequence:
TGTTACAAAAGT
Flanking Amino Acid:
FTREQLQRMKLQMATLLQMK
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
61.7
42.9
Major BPS
60.3
0.26
1
65.5
28
Major PPT
89.6
0.89
0.6
84.8
30
Minor 5ss
38.4
-1.3
3
48.6
47.1
Minor BPS
45.3
-0.2
2.3
70.77
45.5

Associated Gene:

Gene:
SPDL1
Ensembl Gene ID:
ENSAPLG00000013147
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020055
4980124 - 5002204
22081
ENSAPLT00000019605
4980124 - 5002204
22081
ENSAPLT00000013721
4979076 - 4993489
14414
ENSAPLT00000047335
4979659 - 5001625
21967