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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_4992282_4992938_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4992282 - 4992938
Intron Length:
657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTGTGTATAAAA
Flanking Amino Acid:
DELKMKYEPEELLKVTKIKK
Intron Amino Acid Position:
443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
84.8
0.78
0.6
85.1
22.4
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
48
-0.1
2.1
65.21
41.3

Associated Gene:

Gene:
SPDL1
Ensembl Gene ID:
ENSAPLG00000013147
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047335
4979659 - 5001625
21967
ENSAPLT00000020055
4980124 - 5002204
22081
ENSAPLT00000019605
4980124 - 5002204
22081
ENSAPLT00000013721
4979076 - 4993489
14414