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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5013930_5018194_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
5013930 - 5018194
Intron Length:
4265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTGTTCTTA
5'SS Class:
weak_major
3'SS Sequence:
AATGATAACAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CATTTGTTAAGT
Flanking Amino Acid:
HILESCEGKLWIAIFPLSQQ
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.7
0.02
1
52
34.9
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
48
-0.1
1.1
42.7
40.5
Minor 5ss
50.1
0
2.6
65.1
41.9
Minor BPS
49.8
0.07
2.3
72.02
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018191
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044242
5013161 - 5040527
27367