Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5019789_5021815_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5019789 - 5021815

Intron Length:

2027

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTGGG

5'SS Class:

strong_major

3'SS Sequence:

TCTGTTTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTGAT

U12 Branch Point Sequence:

ATTGATGAAACT

Flanking Amino Acid:

KVTSKIDYGNKILELDLIVR

Intron Amino Acid Position:

153

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.1

0.78

69.9

41.1

Major BPS

81.2

0.78

1.1

71.4

45.1

Major PPT

88.6

0.87

0.7

83.9

Minor 5ss

33.8

-1.8

3.2

40.5

39.9

Minor BPS

42.8

-0.4

2.4

66.5

44.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018191

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044242

5013161 - 5040527

27367