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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5021952_5024257_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5021952 - 5024257
Intron Length:
2306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGAATA
5'SS Class:
major
3'SS Sequence:
TTCTTCTGAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TTCTTCTGAATA
Flanking Amino Acid:
KITERIKEEMSKDQPDYASY
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
73.5
37.2
Major BPS
84.6
0.86
1
74
41.2
Major PPT
71.6
0.49
0.9
69.7
35.5
Minor 5ss
35.8
-1.6
3.3
45.4
44
Minor BPS
68.9
0.59
1.4
75.52
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018191
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044242
5013161 - 5040527
27367