Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5025965_5026427_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5025965 - 5026427

Intron Length:

463

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAAGTGTT

5'SS Class:

major

3'SS Sequence:

CTTTTTCTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATAAT

U12 Branch Point Sequence:

AATACTTTAACT

Flanking Amino Acid:

MLNNLKVVFTDLGNKDLSRD

Intron Amino Acid Position:

278

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.9

0.68

79.3

34.5

Major BPS

71.2

0.53

70.3

31.9

Major PPT

89.4

0.89

0.6

88.9

20.3

Minor 5ss

40.8

-1

3.4

63.8

41.6

Minor BPS

76.4

0.91

1.2

84.66

35.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018191

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044242

5013161 - 5040527

27367