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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5036101_5038078_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
5036101 - 5038078
Intron Length:
1978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGGAT
5'SS Class:
major
3'SS Sequence:
TTATTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
AATACATTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
67.6
37.3
Major BPS
68
0.45
1
57.8
39
Major PPT
93.1
0.97
0.7
92.4
26
Minor 5ss
37
-1.5
3.6
55.1
49.2
Minor BPS
50
0.08
1.9
69.99
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012356
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012981
5034076 - 5194958
160883
Gene:
Ensembl Gene ID:
ENSAPLG00000018191
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044242
5013161 - 5040527
27367