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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5038263_5038376_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
5038263 - 5038376
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTATC
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCTATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTGTTTAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
79.7
33.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
78.7
0.65
0.9
79.3
33.7
Minor 5ss
46.5
-0.4
2.5
59.7
39.2
Minor BPS
74.8
0.86
1.7
91.31
32.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012356
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012981
5034076 - 5194958
160883
Gene:
Ensembl Gene ID:
ENSAPLG00000018191
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044242
5013161 - 5040527
27367