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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5038475_5040075_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
5038475 - 5040075
Intron Length:
1601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATATCTT
5'SS Class:
major
3'SS Sequence:
TGTTTTTGTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTTTTTGTATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1
70.5
39.5
Major BPS
100
1.24
0.5
100
0
Major PPT
80
0.67
0.9
76.5
37.7
Minor 5ss
47.3
-0.3
2.9
67
38.3
Minor BPS
49
-0
1.7
63.99
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012356
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012981
5034076 - 5194958
160883
Gene:
Ensembl Gene ID:
ENSAPLG00000018191
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044242
5013161 - 5040527
27367