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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5040166_5040422_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
5040166 - 5040422
Intron Length:
257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
CATCTCTGTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
CTTTACTAAAAA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
77.2
37.6
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
75.4
0.57
0.9
72.9
37
Minor 5ss
37.2
-1.4
3
46.5
42.8
Minor BPS
53.8
0.12
2
69.52
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012356
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012981
5034076 - 5194958
160883
Gene:
Ensembl Gene ID:
ENSAPLG00000018191
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044242
5013161 - 5040527
27367