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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5054803_5071336_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5054803 - 5071336
Intron Length:
16534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAA
U12 Branch Point Sequence:
TTGCTCTTAAGA
Flanking Amino Acid:
IVRSNLFKKQECRDILLPVI
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
89.5
23.2
Major BPS
69.9
0.49
1
61.3
37
Major PPT
97.3
1.06
0.5
96.6
11.5
Minor 5ss
38.7
-1.3
2.9
50.9
45.5
Minor BPS
63.9
0.43
1.6
72.13
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012356
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012981
5034076 - 5194958
160883