Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5071480_5080322_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5071480 - 5080322

Intron Length:

8843

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCT|GTAAGTATT

5'SS Class:

major

3'SS Sequence:

TTTTCATTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TTTTCATTTACA

Flanking Amino Acid:

ILEVLSCQDPASTYHHIQEI

Intron Amino Acid Position:

187

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.7

0.68

1.1

84.2

33.6

Major BPS

100

1.24

0.5

100

Major PPT

0.9

0.7

84.6

29.1

Minor 5ss

44.6

-0.6

2.9

70.4

39.5

Minor BPS

69.6

0.61

1.9

85.1

33.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012356

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012981

5034076 - 5194958

160883