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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5080419_5123329_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5080419 - 5123329
Intron Length:
42911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTAAT
5'SS Class:
major
3'SS Sequence:
CGTTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
TATGTTTCAACT
Flanking Amino Acid:
ITMRRDDPLISHFVACMTAI
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
77.8
31.2
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
87
0.83
0.7
84.6
30.3
Minor 5ss
34.5
-1.8
2.9
48.3
41.8
Minor BPS
59.8
0.39
1.6
76.67
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012356
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012981
5034076 - 5194958
160883