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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5084910_5087320_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5084910 - 5087320
Intron Length:
2411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAGAAA
5'SS Class:
major
3'SS Sequence:
TTTTGTATTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
ACTTATTTAAAC
Flanking Amino Acid:
KKELRRKTKKCLILEFRTVH
Intron Amino Acid Position:
542

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
0.9
73.3
32.3
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
83.8
0.76
0.8
82.4
34
Minor 5ss
25.5
-2.8
3
29.9
43.2
Minor BPS
59.5
0.28
1.6
66.93
38.4

Associated Gene:

Gene:
INSYN2B
Ensembl Gene ID:
ENSAPLG00000013108
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013643
5084871 - 5095802
10932