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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5125249_5140097_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5125249 - 5140097
Intron Length:
14849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTGG
5'SS Class:
major
3'SS Sequence:
TTTTTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTGATC
Flanking Amino Acid:
DWIAMSMVQNRVFLRAINKF
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
63.7
43.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
97
1.06
0.5
96.7
11.4
Minor 5ss
35.5
-1.6
3.3
46.8
48.5
Minor BPS
60.7
0.32
1.6
71.1
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012356
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012981
5034076 - 5194958
160883