Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5148233_5148324_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5148233 - 5148324

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGCAAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTTCTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAAAGAT

U12 Branch Point Sequence:

GTAAAGATACTT

Flanking Amino Acid:

SHAKYNKIQNKYGDMRRLIG

Intron Amino Acid Position:

343

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

33.6

Major BPS

59.6

0.24

1.1

55.4

40.4

Major PPT

0.99

0.5

88.9

28.2

Minor 5ss

40.4

-1.1

2.9

48.9

41.5

Minor BPS

35.5

-1

2.3

52.41

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012356

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012981

5034076 - 5194958

160883