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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5148384_5150943_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5148384 - 5150943
Intron Length:
2560

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
AATTTTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TAATGTTTAATT
Flanking Amino Acid:
FAIRDMWYKLGQNKICFIPG
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.5
41.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77.7
0.62
0.9
75.5
38.5
Minor 5ss
29.8
-2.3
2.6
30.3
36.7
Minor BPS
63.9
0.52
1.7
77.68
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012356
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012981
5034076 - 5194958
160883