Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5165136_5167151_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5165136 - 5167151

Intron Length:

2016

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGGTTG

5'SS Class:

strong_major

3'SS Sequence:

TCTCCTCTAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTACTAT

U12 Branch Point Sequence:

TCTCCTCTAACA

Flanking Amino Acid:

KDINREGMYIRYLYKLRDLH

Intron Amino Acid Position:

507

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

72.1

39.9

Major BPS

62.1

0.3

1.4

61.1

Major PPT

77.5

0.62

0.8

73.1

30.3

Minor 5ss

46.4

-0.4

3.1

63.6

48.1

Minor BPS

62.6

0.39

1.7

73.45

38.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012356

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012981

5034076 - 5194958

160883