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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5178868_5180284_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5178868 - 5180284
Intron Length:
1417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTACTAAATA
Flanking Amino Acid:
RWFEVISMSQTTISPLENAI
Intron Amino Acid Position:
775

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
100
1.24
0.5
100
0
Major PPT
85.6
0.8
0.7
80.9
30.8
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
61.6
0.36
1.8
74.71
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012356
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012981
5034076 - 5194958
160883