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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5181844_5185389_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5181844 - 5185389
Intron Length:
3546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACATCT
5'SS Class:
major
3'SS Sequence:
TCACCTCTTCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCTTCTATT
Flanking Amino Acid:
NRLKDLIAWQIPFLGAGIKI
Intron Amino Acid Position:
862

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1.1
75.1
35.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
66.6
0.37
1
63.9
36.9
Minor 5ss
46.1
-0.4
2.9
66.5
44.4
Minor BPS
61.5
0.44
1.8
83.99
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012356
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021535
5180142 - 5195127
14986
ENSAPLT00000012981
5034076 - 5194958
160883