Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5189215_5191446_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

5189215 - 5191446

Intron Length:

2232

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGT|GTATGTTAC

5'SS Class:

weak_major

3'SS Sequence:

TATTATTAAACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTATTATTAAAC

Flanking Amino Acid:

PDISISDMKCLSRKYEFMSD

Intron Amino Acid Position:

1011

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.9

0.4

1.1

36.9

Major BPS

96.5

1.15

0.6

34.2

Major PPT

0.47

1.1

66.9

42.5

Minor 5ss

48.6

-0.1

2.4

61.4

43.6

Minor BPS

62.6

0.37

1.7

73.75

36.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012356

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021535

5180142 - 5195127

14986

ENSAPLT00000012981

5034076 - 5194958

160883