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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5194207_5194975_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5194207 - 5194975
Intron Length:
769

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAATTAAT
5'SS Class:
major
3'SS Sequence:
CTGGAATCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTGCCTTGAACC
Flanking Amino Acid:
EHHFKSPSTDLCHHVFNSIL
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.1
73.2
37.3
Major BPS
85
0.87
0.8
85.6
23
Major PPT
62
0.27
1
51.6
42.7
Minor 5ss
40.4
-1.1
2.9
61.4
42.9
Minor BPS
65.4
0.46
1.4
72.79
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012356
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021535
5180142 - 5195127
14986