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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5227101_5228469_F

Intron Information:

Intron Rank:
125961
Intron Class:
major
Intron Phase:
Intron Coordinates:
5227101 - 5228469
Intron Length:
1369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGCTGA
5'SS Class:
major
3'SS Sequence:
TTGTTTTTGACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTAAA
U12 Branch Point Sequence:
TTGTTTTTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1.2
59.7
41.7
Major BPS
61.3
0.28
1.1
61.7
34.1
Major PPT
82
0.72
1
79.9
37.7
Minor 5ss
45.7
-0.5
2.5
57
47.2
Minor BPS
72.3
0.7
1.1
77.15
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017860
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040634
5224053 - 5228845
4793