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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5253244_5253345_R

Intron Information:

Intron Rank:
130035
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
5253244 - 5253345
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTGAT
5'SS Class:
major
3'SS Sequence:
CTCACCTAAATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTTTTCTCACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
76.9
31.7
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
59.2
0.21
0.9
54.8
34.1
Minor 5ss
42.2
-0.9
3.2
57.4
41.7
Minor BPS
66
0.58
1.8
87.74
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017166
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036931
5252555 - 5273460
20906