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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_525449_525715_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
525449 - 525715
Intron Length:
267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TTTCCTTTATCT
Flanking Amino Acid:
SSWSEWSSLCR*
Intron Amino Acid Position:
315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
71.6
40.2
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
88.9
0.87
0.7
83.5
31.2
Minor 5ss
38.2
-1.3
3
48.7
47
Minor BPS
72.7
0.79
1.5
89.39
35

Associated Gene:

Gene:
IL12B
Ensembl Gene ID:
ENSAPLG00000009092
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009477
524559 - 601709
77151