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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_527274_528104_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
527274 - 528104
Intron Length:
831

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TGTGAAATAATA
Flanking Amino Acid:
YTSSFFIRDIIKPDPPQCQY
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
73.4
32.4
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
93.2
0.97
0.6
88.8
20.4
Minor 5ss
31.8
-2.1
2.7
38.8
40.3
Minor BPS
44.6
-0.4
2
59.54
39.9

Associated Gene:

Gene:
IL12B
Ensembl Gene ID:
ENSAPLG00000009092
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009477
524559 - 601709
77151