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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5277918_5278013_F

Intron Information:

Intron Rank:
135147
Intron Class:
major
Intron Phase:
Intron Coordinates:
5277918 - 5278013
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGATTAT
5'SS Class:
major
3'SS Sequence:
TCTTGTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
GATTCCATCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
77.3
33.9
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
85.3
0.8
0.8
76.9
37.3
Minor 5ss
39.8
-1.1
3.3
57.3
47.4
Minor BPS
53.6
0.19
2
75.11
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022718
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017789
5277204 - 5292547
15344