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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5278061_5290559_F

Intron Information:

Intron Rank:
135151
Intron Class:
major
Intron Phase:
Intron Coordinates:
5278061 - 5290559
Intron Length:
12499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCCCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTTGCCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
78.9
0.65
0.8
70.3
36.3
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
47.5
-0.2
3.4
76.51
34.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022718
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019963
5277204 - 5292547
15344