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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_528299_529332_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
528299 - 529332
Intron Length:
1034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAAAGCT
5'SS Class:
major
3'SS Sequence:
GTTTCATGTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTCTGTTTCATG
Flanking Amino Acid:
NVKFTIRSLKGSHGDVTCSS
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
65.8
38.4
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
76.6
0.6
1
73.9
40.7
Minor 5ss
32
-2.1
3.5
39.9
45.7
Minor BPS
47.3
-0.3
2.2
57.98
44.9

Associated Gene:

Gene:
IL12B
Ensembl Gene ID:
ENSAPLG00000009092
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009477
524559 - 601709
77151