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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_52885_53942_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52885 - 53942
Intron Length:
1058

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGACAG
5'SS Class:
major
3'SS Sequence:
CCTCCCCCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
GACTCCCTGACG
Flanking Amino Acid:
HFHIRCFTCQVCGCDLAQSG
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
62.5
43.8
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
76.3
0.59
0.7
69.3
24.5
Minor 5ss
29.9
-2.3
3.3
37.9
47
Minor BPS
53.4
-0
1.8
57.39
43.8

Associated Gene:

Gene:
ABLIM3
Ensembl Gene ID:
ENSAPLG00000012449
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013019
28337 - 69087
40751
ENSAPLT00000042079
28564 - 68885
40322
ENSAPLT00000029729
28564 - 68885
40322
ENSAPLT00000021842
28564 - 68885
40322