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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5291210_5291908_F

Intron Information:

Intron Rank:
135149
Intron Class:
major
Intron Phase:
Intron Coordinates:
5291210 - 5291908
Intron Length:
699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTATGTTCC
5'SS Class:
major
3'SS Sequence:
CTATTTCATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTCTATTTCATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.1
70.5
34.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
78.4
0.64
0.9
73.2
36.2
Minor 5ss
50
0
2.3
66.7
37.4
Minor BPS
51.6
0.04
1.9
67.44
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022718
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017789
5277204 - 5292547
15344
ENSAPLT00000044831
5289857 - 5292547
2691
ENSAPLT00000025414
5277204 - 5292547
15344
ENSAPLT00000019963
5277204 - 5292547
15344