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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5291210_5292440_F

Intron Information:

Intron Rank:
135158
Intron Class:
major
Intron Phase:
Intron Coordinates:
5291210 - 5292440
Intron Length:
1231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTATGTTCC
5'SS Class:
major
3'SS Sequence:
CTTTGTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
GTGCTGTGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.1
70.5
34.2
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
84.2
0.77
0.8
81.4
34.9
Minor 5ss
50
0
2.3
66.7
37.4
Minor BPS
43.2
-0.4
2.1
60.15
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022718
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029601
5290930 - 5292596
1667