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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5292003_5292440_F

Intron Information:

Intron Rank:
135150
Intron Class:
major
Intron Phase:
Intron Coordinates:
5292003 - 5292440
Intron Length:
438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATTCTG
5'SS Class:
major
3'SS Sequence:
CTTTGTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
GTGCTGTGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
67.3
43.6
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
84.2
0.77
0.8
81.4
34.9
Minor 5ss
38
-1.3
3
47.3
42.4
Minor BPS
43.2
-0.4
2.1
60.15
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022718
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017789
5277204 - 5292547
15344
ENSAPLT00000044831
5289857 - 5292547
2691
ENSAPLT00000025414
5277204 - 5292547
15344
ENSAPLT00000019963
5277204 - 5292547
15344