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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_529451_530957_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
529451 - 530957
Intron Length:
1507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCAATCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAA
U12 Branch Point Sequence:
TCTTCTTTGACT
Flanking Amino Acid:
MIRSILKSYKEPNRTFLKCE
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
79.4
29.7
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
71.8
0.49
1
64.2
41.7
Minor 5ss
46.6
-0.4
2.4
59.3
45.3
Minor BPS
82.3
1.1
1
90.81
33.2

Associated Gene:

Gene:
IL12B
Ensembl Gene ID:
ENSAPLG00000009092
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009477
524559 - 601709
77151