About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5296001_5296972_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5296001 - 5296972
Intron Length:
972

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTCTTT
5'SS Class:
major
3'SS Sequence:
TTTCATCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTTTCATCT
Flanking Amino Acid:
AEAALRKINKDGTFLVRDSS
Intron Amino Acid Position:
420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
71.8
40.6
Major BPS
100
1.24
0.5
100
0
Major PPT
87.6
0.85
0.7
85.1
29.2
Minor 5ss
48.8
-0.1
3.1
73.8
42.7
Minor BPS
56.6
0.29
1.8
77.97
38.7

Associated Gene:

Gene:
LCP2
Ensembl Gene ID:
ENSAPLG00000011852
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012360
5295063 - 5326088
31026