Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5297051_5297973_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

5297051 - 5297973

Intron Length:

923

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACAGAAA

5'SS Class:

major

3'SS Sequence:

ACAAATAATATAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AAATAAT

U12 Branch Point Sequence:

TCTCCCACAAAT

Flanking Amino Acid:

AQHTNTEEDEDSLNDEWYVA

Intron Amino Acid Position:

394

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.4

0.53

1.1

68.4

38.1

Major BPS

71.2

0.53

70.3

31.9

Major PPT

52.5

0.06

44.4

40.4

Minor 5ss

29.9

-2.3

3.3

39.1

46.3

Minor BPS

49.4

0.03

1.9

72.58

43.4

Associated Gene:

Gene:

LCP2

Ensembl Gene ID:

ENSAPLG00000011852

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012360

5295063 - 5326088

31026