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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5298078_5298834_R

Intron Information:

Intron Rank:
14
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
5298078 - 5298834
Intron Length:
757

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTTGTATC
5'SS Class:
major
3'SS Sequence:
GACAACTTCAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTATTCTTATAT
Flanking Amino Acid:
SGSLPPRFPLGNNSRSPSRG
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
79.1
34.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
50.6
0.01
1.1
47.8
38.9
Minor 5ss
42.7
-0.8
2.5
54.7
42.5
Minor BPS
57.7
0.32
1.7
73.55
43.2

Associated Gene:

Gene:
LCP2
Ensembl Gene ID:
ENSAPLG00000011852
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012360
5295063 - 5326088
31026