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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5298885_5300629_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5298885 - 5300629
Intron Length:
1745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTATC
5'SS Class:
major
3'SS Sequence:
GTTTTTACACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTGTACTTACTA
Flanking Amino Acid:
PGSNSMPGAESARSLSASGS
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
79.1
34.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
74.9
0.56
1
68.2
42.2
Minor 5ss
42.7
-0.8
2.5
54.7
42.5
Minor BPS
59.9
0.31
1.8
71.99
40.5

Associated Gene:

Gene:
LCP2
Ensembl Gene ID:
ENSAPLG00000011852
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012360
5295063 - 5326088
31026