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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5302378_5303275_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5302378 - 5303275
Intron Length:
898

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
CTATGATTAATG
Flanking Amino Acid:
PTPLRKQTPVKQGWPQQKRP
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
81.8
29.7
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
84.9
0.79
0.8
82.2
34.1
Minor 5ss
38.1
-1.3
3.6
56.6
42
Minor BPS
48.8
-0.2
2.1
57.08
44.6

Associated Gene:

Gene:
LCP2
Ensembl Gene ID:
ENSAPLG00000011852
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012360
5295063 - 5326088
31026