About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_5303381_5303486_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5303381 - 5303486
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
GCTCCTCCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTGTCTTTATTT
Flanking Amino Acid:
YLLMPLTPQLRSLGEQLAMM
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
68.7
0.42
0.8
66
30.2
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
69.5
0.69
1.5
83.25
38.8

Associated Gene:

Gene:
LCP2
Ensembl Gene ID:
ENSAPLG00000011852
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012360
5295063 - 5326088
31026