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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_14_531240_533234_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
531240 - 533234
Intron Length:
1995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
CAATCTCCACAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATGAAT
U12 Branch Point Sequence:
TTTTCTGCAATC
Flanking Amino Acid:
LEAQWKLRENVYVIESEWND
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1
75.8
40
Major BPS
66.8
0.42
1.4
75.9
36.3
Major PPT
52.8
0.06
1.1
50.7
37.8
Minor 5ss
35.7
-1.6
3.1
50.5
45.5
Minor BPS
54.2
0.11
2.2
74.09
37.4

Associated Gene:

Gene:
IL12B
Ensembl Gene ID:
ENSAPLG00000009092
Chromosome:
14

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009477
524559 - 601709
77151